Qing Zhou and Jun S. Liu (2008), Nucleic Acids Research, 36: 4137-4148. [Link to the paper]
Supplemental materials: Supplemental text, Supplemental Table 1, Supplemental Table 2.
Sequence sets: human Oct4 bound regions and Sox2 bound regions.
ChIP-enrichment and Feature matrices:
Oct4 data set and
Sox2 data set.
Data matrix format with columns corresponding
to SeqID, ChIP-fold change, and the 269 extracted features. Note that log(ChIP-fold
change) was used in the paper.