Aragam, B. and Zhou, Q. (2015). Concave penalized estimation of sparse Gaussian Bayesian networks.
Journal of Machine Learning Research, 16: 2273-2328.
Zhou, Q. (2014). Monte Carlo simulation for Lasso-type problems by estimator augmentation.
Journal of the American Statistical Association, 109: 1495-1516.
Cha, M. and Zhou, Q. (2014). Detecting clustering and ordering binding patterns among transcription factors via point process models. Bioinformatics, 30: 2263-2271.
Fu, F. and Zhou, Q. (2013).
Learning sparse causal Gaussian networks with experimental intervention:
Regularization and coordinate descent.
Journal of the American Statistical Association, 108: 288-300.
Zhou, Q. (2011).
Multi-domain sampling with applications to structural inference of Bayesian networks.
Journal of the American Statistical Association, 106: 1317-1330.
Zhou, Q. (2011).
Random walk over basins of attraction to construct Ising energy landscapes.
Physical Review Letters, 106: 180602.
Sridharan, R., Tchieu, J., Mason, M.J., Yachechko, R., Kuoy, E., Horvath, S.,
Zhou, Q., and Plath, K. (2009). Role of the murine
reprogramming factors in the induction of pluripotency. Cell, 136:
Zhou, Q., Chipperfield, H., Melton, D.A., and Wong, W.H. (2007).
A gene regulatory network in mouse embryonic stem cells. Proceedings of the National Academy
of Sciences of USA, 104: 16438-16443.
S.C.*, Zhou, Q.*, and Wong, W.H. (2006). Equi-energy sampler with applications in statistical
inference and statistical mechanics (with discussion). Annals of Statistics,
34: 1581-1652. (*Equal contribution.)
Zhou, Q. and Wong, W.H. (2004).
CisModule: De novo discovery of cis-regulatory
modules by hierarchical mixture modeling. Proceedings of the National Academy of Sciences of USA,
Zhou, Q. and Liu, J.S. (2004).
Modeling within-motif dependence for transcription factor
binding site predictions. Bioinformatics, 20: 909-916.